PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000381897
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 102aa    MW: 11677.6 Da    PI: 10.0874
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000381897genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.7e-283290259
                   --SS-EEEEEEE--TT-SS-EEEEEE.-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  2 dDgynWrKYGqKevkgsefprsYYrC.tsagCpvkkkversaedpkvveitYegeHnhe 59
                    D+y+WrKYGqK++kgs++pr+YYrC t +gCp++k+v+r+ +dp ++++tY  eH+h 
  MDP0000381897 32 TDEYSWRKYGQKPIKGSPYPRGYYRCiTVKGCPARKQVDRAPNDPMTLIVTYYWEHRHA 90
                   69************************5556****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-301990IPR003657WRKY domain
PROSITE profilePS5081128.5522692IPR003657WRKY domain
SuperFamilySSF1182901.83E-252990IPR003657WRKY domain
SMARTSM007743.0E-313191IPR003657WRKY domain
PfamPF031066.4E-253389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDPVRGGLGV RKKQVKTIRV PVIGSKINDI PTDEYSWRKY GQKPIKGSPY PRGYYRCITV  60
KGCPARKQVD RAPNDPMTLI VTYYWEHRHA PENMELVCET K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-191989271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222945.19e-43hypothetical protein PRUPE_ppa008846mg
SwissprotQ9SV153e-36WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLM5XDZ81e-42M5XDZ8_PRUPE; Uncharacterized protein
STRINGGLYMA06G08120.12e-37(Glycine max)
STRINGGRMZM2G071907_P012e-37(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-37WRKY DNA-binding protein 11